IZUMI ACHIEVEMENT LIST

Original

  1. Kunduri G, Turner-Evans D, Konya Y, Izumi Y, Nagashima K, Lockett S, Holthuis J, Bamba T, Acharya U, *Acharya J K.
    A defective cortex glia plasma membrane structure underlies light-induced epilepsy in cpes mutants.
    Proc. Natl. Acad. Sci. USA, 115(38), E8919-E8928 (2018).
    doi: 10.1073/pnas.1808463115
  2. Takahashi M, *Izumi Y (co-corresponding author), Iwahashi F, Nakayama Y, Iwakoshi M, Nakao M, Yamato S, Fukusaki E, *Bamba T.
    Highly accurate detection and identification methodology of xenobiotic metabolites using stable isotope labeling, data mining techniques, and time-dependent profiling based on LC/HRMS/MS.
    Anal. Chem., 90(15), 9068-9076 (2018).
    doi: 10.1021/acs.analchem.8b01388.
  3. *Kobori M, Takahashi Y, Takeda H, Takahashi M, Izumi Y, Akimoto Y, Sakurai M, Oike H, Bamba T, Kimura T.
    Dietary intake of curcumin improves eIF2 signaling and reduces lipid levels in the white adipose tissue of obese mice.
    Sci. Rep., 8: Article number 9081 (2018).
    doi: org/10.1038/s41598-018-27105-w.
  4. Takeda H, Izumi Y (co-first author), Takahashi M, Paxton T, Tamura S, Koike T, Yu Y, Kato N, Nagase K, Shiomi M, *Bamba T.
    Widely-targeted quantitative lipidomics method by supercritical fluid chromatography triple quadrupole mass spectrometry.
    J. Lipid Res., 59(7), 1283-1293 (2018).
    doi: 10.1194/jlr.D083014.
  5. Obata Y, *Kita S, Koyama Y, Fukuda S, Takeda H, Takahashi M, Fujishima Y, Nagao H, Masuda S, Tanaka Y, Nakamura Y, Nishizawa H, Funahashi T, Ranscht B, Izumi Y, Bamba T, Fukusaki E, Hanayama R, Shimada S, Maeda N, Shimomura I.
    Adiponectin/T-cadherin system enhances exosome biogenesis and decreases cellular ceramides by exosomal release.
    JCI Insight, 3(8), e99680 (2018).
    doi: 10.1172/jci.insight.99680.
  6. *Nishiumi S, Izumi Y, *Yoshida M.
    Alterations in docosahexaenoic acid-related lipid cascades in inflammatory bowel disease model mice.
    Dig. Dis. Sci., 63(6):1485-1496 (2018).
    doi: 10.1007/s10620-018-5025-4
  7. Tamura S, Koike Y, Takeda H, Koike T, Izumi Y, Nagasaka R, Tsunoda T, Tori M, Ogawa K, Bamba T, *Shiomi M.
    Ameliorating effects of D-47, a newly developed compound, on lipid metabolism in an animal model of familial hypercholesterolemia (WHHLMI rabbits).
    Eur. J. Pharmacol., 822, 147-153 (2018).
    doi: 10.1016/j.ejphar.2018.01.013
  8. *Bowde J A, Heckert A, Ulmer C Z, Jones C M, Koelmel J P, Abdullah L, Ahonen L, Alnouti Y, Armando A, Asara J M, Bamba T, Barr J R, Bergquist J, Borchers C H, Brandsma J, Breitkopf S B, Cajka T, Cazenave-Gassiot A, Checa A, Cinel M A, Colas R A, Cremers S, Dennis E A, Evans J E, Fauland A, Fiehn O, Gardner M S, Garrett T J, Gotlinger K H, Han J, Huang Y, Neo A H, Hyötyläinen T, Izumi Y, Jiang H, Jiang H, Jiang J, Kachman M, Kiyonami R, Klavins K, Klose C, Köfeler H C, Kolmert J, Koal T, Koster G, Kuklenyik Z, Kurland I J, Leadley M, Lin K,  Maddipati K R,  McDougall D,  Meikle P J,  Mellett N A,  Monnin C, Moseley M A, Nandakumar R, Oresic M, Patterson R, Peake D, Pierce J S, Post M, Postle A D, Pugh R, Qiu Y,  Quehenberger O, Ramrup P, Rees J, Rembiesa B, Reynaud D, Roth M R, Sales S, Schuhmann K, Schwartzman M L,  Serhan C N, Shevchenko A, Somerville S E, John-Williams L S, Surma M A, Takeda H, Thakare R, Thompson J W, Torta F, Triebl A, Trötzmüller M, Ubhayasekera S J K, Vuckovic D, Weir J M, Welti R, Wenk M R, Wheelock C E, Yao L, Yuan M, Zhao X H, Zhou S.
    Harmonizing Lipidomics: NIST Interlaboratory Comparison Exercise for Lipidomics using Standard Reference Material 1950–Metabolites in Frozen Human Plasma.
    J. Lipid Res., 58(12), 2275-2288 (2017).
    doi: 10.1194/jlr.M079012.
  9. Sakamoto T, *Sakuradani E, Okuda T, Kikukawa H, Ando A, Kishino S, Izumi Y, Bamba T, Shima J, Ogawa J.
    Metabolic engineering of oleaginous fungus Mortierella alpina for high production of oleic and linoleic acids.
    Bioresour. Technol., 245, 1610-1615 (2017).
    doi: 10.1016/j.biortech.2017.06.089.
  10. Fujito Y, Hayakawa Y, Izumi Y, *Bamba T.
    Importance of optimizing chromatographic conditions and mass spectrometric parameters for supercritical fluid chromatography/mass spectrometry.
    J. Chromatogr. A, 1508, 138-147 (2017).
    doi: 10.1016/j.chroma.2017.05.071.
  11. Ogawa T, Izumi Y, Kusumoto K, Fukusaki E, *Bamba T.
    Wide target analysis of acylglycerols in miso (Japanese fermented soybean paste) by supercritical fluid chromatography coupled with triple quadrupole mass spectrometry and the analysis of the correlation between taste and both acylglycerols and free fatty acids.
    Rapid Commun. Mass Spectrom., 31(11), 928-936 (2017).
    doi: 10.1002/rcm.7862.
  12. Suzuki M, Nishiumi S, Kobayashi T, Sakai A, Iwata Y, Uchikata T, Izumi Y, Azuma T, Bamba T, *Yoshida M.
    The use of on-line SFE-SFC/MS/MS to analyze disease biomarkers in dried serum spots compared with serum analysis using LC/MS/MS.
    Rapid Commun. Mass Spectrom., 31(10), 886-894 (2017).
    doi: 10.1002/rcm.7857.
  13. Nagata M, Izumi Y, Ishikawa E, Kiyotake R, Doi R, Iwai S, Omahdi Z, Yamaji T, Miyamoto T, Bamba T, *Yamasaki S.
    Intracellular metabolite b-GlucosylCeramide is an endogenous Mincle ligand possessing immunostimulatory activity.
    Proc. Natl. Acad. Sci. USA, 114(16), E3285-E3294 (2017).
    doi: 10.1073/pnas.1618133114.
  14. Minami S, Yamamoto T, *Takabatake Y, Takahashi A, Namba T, Matsuda J, Kimura T, Kaimori J, Matsui I, Takeda H, Takahashi M, Izumi Y, Bamba T, Matsusaka T, Niimura F, Isaka Y.
    Lipophagy maintains energy homeostasis in the kidney proximal tubule during prolonged starvation.
    Autophagy, 16, 1-19 (2017).
    doi:10.4155/bio-2016-0234.
  15. Takeda H, Izumi Y, Tomita A, Koike T, Shiomi M, Fukusaki E, Matsuda F, *Bamba T.
    Lipoprotein profiling methodology based on determination of apolipoprotein concentration.
    Bioanalysis, 9(1), 9-19 (2017).
    doi:10.4155/bio-2016-0234.
  16. Takeda H, Koike T, Izumi Y, Yamada T, Yoshida M, Shiomi M, Fukusaki E, *Bamba T.
    Lipidomic analysis of plasma lipoprotein fractions in myocardial infarction-prone rabbits.
    J. Biosci. Bioeng., 120(4): 476-482 (2015).
    doi: 10.1016/j.jbiosc.2015.02.015.
  17. Ishibashi M, Izumi Y, Sakai M, Ando T, Fukusaki E, *Bamba T.
    High-throughput simultaneous analysis of pesticides by supercritical fluid chromatography coupled with high-resolution mass spectrometry.
    J. Agric. food Chem., 63(18): 4457-63 (2015).
    doi: 10.1021/jf5056248.
  18. *Tsugawa H, Ohta E, Izumi Y, Ogiwara A, Yukihira D, Bamba T, Fukusaki E, Arita M. MRM-DIFF: Data Processing Strategy for Differential Analysis in Large Scale MRM-based Lipidomics Studies.
    Frontiers in Genetics, 5: Article number 471 (2015).
    doi: 10.3389/fgene.2014.00471.
  19. Matsubara A, Izumi Y, Nishiumi S, Suzuki M, Azuma T, Fukusaki E, *Bamba T, *Yoshida M.
    Supercritical fluid extraction as a preparation method for mass spectrometry of dried blood spots.
    J. Chromatogr. B Analyt. Technol. Biomed. Life Sci., 969: 199-204 (2014).
    doi: 10.1016/j.jchromb.2014.08.013.
  20. Izumi Y, Aritake K, Urade Y, *Fukusaki E.
    Practical evaluation of liquid chromatography/tandem mass spectrometry and enzyme immunoassay method for the accurate quantitative analysis of prostaglandins.
    J. Biosci. Bioeng., 118(1): 116-118 (2014).
    doi: 10.1016/j.jbiosc.2013.12.022.
  21. Aikawa S, Joseph A, Yamada R, Izumi Y, Yamagishi T, Matsuda F, Kawai H, Chang JS, Hasunuma T, *Kondo A.
    Direct conversion of Spirulina to ethanol without pretreatment or enzymatic hydrolysis processes.
    Energy Environ. Sci., 6: 1844-1849 (2013).
    doi: 10.1039/C3EE40305J.
  22. Izumi Y, Aikawa S, Matsuda F, Hasunuma T, *Kondo A.
    Aqueous size-exclusion chromatographic method for the quantification of cyanobacterial native glycogen.
    J. Chromatogr. B Analyt. Technol. Biomed. Life Sci., 930: 90-97 (2013). doi: 10.1016/j.jchromb.2013.04.037.
  23. *Hasunuma T, Kikuyama F, Matsuda M, Aikawa S, Izumi Y, Kondo A.
    Dynamic metabolic profiling of cyanobacterial glycogen biosynthesis under conditions of nitrate depletion.
    J. Exp. Bot., 64(10): 2943-2954 (2013).
    doi: 10.1093/jxb/ert134.
  24. Okada T, Fukuda S, Hase K, Nishiumi S, Izumi Y, Yoshida M, Hagiwara T, Kawashima R, Yamazaki M, Oshio T, Otsubo T, Inagaki-Ohara K, Kakimoto K, Higuchi K, Kawamura Y, Ohno H, *Dohi T. Microbiota derived lactate accelerates colon epithelial cell turnover in starvation-refed mice.
    Nat. Commun., 4: Article number 1654 (2013).
    doi: 10.1038/ncomms2668.
  25. *Ohira H, Fujioka Y, Katagiri C, Mamoto R, Aoyama M, Izumi Y, Nishiumi S, Yoshida M, Usami M, Ikeda M.
    Butyrate attenuates inflammation and lipolysis generated by the interaction of adipocytes and macrophages.
    J. Atherosclero. Thromb., 20(5): 425-442 (2013).
    doi: org/10.5551/jat.15065.
  26. Kobayashi T, Nishiumi S, Ikeda A, Yoshie T, Sakai1 A, Matsubara A, Izumi Y, Tsumura H, Tsuda M, Nishisaki H, Hayashi N, Kawano S, Fujiwara Y, Minami H, Takenawa T, Azuma T, *Yoshida M.
    A novel serum metabolomics-based diagnostic approach to pancreatic cancer.
    Cancer Epidem. Biomar. Prev., 22(4): 571-579 (2013).
    doi: 10.1158/1055-9965.EPI-12-1033.
  27. Takebayashi K, Hirose K, Izumi Y, Bamba T, *Fukusaki E.
    Application of ion mobility-mass spectrometry to microRNA analysis.
    J. Biosci. Bioeng., 115(3): 332-338 (2013).
    doi: 10.1016/j.jbiosc.2012.10.006.
  28. Lai P, *Okazawa A, Izumi Y, Bamba T, Fukusaki E, Yoshikawa M, Kobayashi A.
    Effect of gallic acid on peptides released by trypsin digestion of bovine a-casein.
    J. Biosci. Bioeng., 115(3): 259-267 (2013).
    doi: 10.1016/j.jbiosc.2012.10.003.
  29. Lai P, *Okazawa A, Izumi Y, Bamba T, Fukusaki E, Yoshikawa M, Kobayashi A.
    Gallic acid oxidizes Met-residues in peptides released from bovine b-lactoglobulin by in vitro digestion.
    J. Biosci. Bioeng., 114(3): 297-305 (2012).
    doi: 10.1016/j.jbiosc.2012.04.019.
  30. Nishiumi S, Kobayashi T, Ikeda A, Yoshie T, Kibi M, Izumi Y, Okuno T, Hayashi N, Kawano S, Takenawa T, Azuma T, *Yoshida M.
    A novel serum metabolomics-based diagnostic approach for colorectal cancer.
    PLoS ONE, 7(7): e40459 (2012).
    doi: 10.1371/journal.pone.0040459.
  31. Sakai A, Nishiumi S, Shiomi Y, Kobayashi T, Izumi Y, Kutsumi H, Hayakumo T, Azuma T, *Yoshida M.
    Metabolomic analysis to discover candidate therapeutic agents against acute pancreatitis.
    Arch. Biochem. Biophys., 522(2): 107-120 (2012).
    doi: 10.1016/j.abb.2012.03.025.
  32. Yoshie T, Nishiumi S, Izumi Y, Sakai A, Inoue J, Azuma T, *Yoshida M.
    Regulation of the metabolite profile by an APC gene mutation in colorectal cancer.
    Cancer Sci., 103(6): 1010-21 (2012).
    doi: 10.1111/j.1349-7006.2012.02262.x.
  33. Aikawa S, Izumi Y, Matsuda F, Hasunuma T, Chang JS, *Kondo, A.
    Synergistic enhancement of glycogen production in Arthrospira platensis by optimization of light intensity and nitrate supply.
    Bioresour. Technol., 108: 211-215 (2012).
    doi: 10.1016/j.biortech.2012.01.004.
  34. Kato H, Izumi Y, Hasunuma T, Matsuda F, *Kondo A.
    Widely targeted metabolic profiling analysis of yeast central metabolites.
    J. Biosci. Bioeng., 113(5): 665-73 (2012).
    doi: 10.1016/j.jbiosc.2011.12.013.
  35. Izumi Y, Takimura S, Yamaguchi S, Iida J, Bamba T, *Fukusaki E.
    Application of electrospray ionization ion trap/time-of-flight mass spectrometry for chemically-synthesized small RNAs.
    J. Biosci. Bioeng., 113(3): 412-419 (2012).
    doi: 10.1016/j.jbiosc.2011.11.007.
  36. Sugimoto T, Bamba T, Izumi Y, Nomura H, Shiina T, *Fukusaki E.
    Use of UPLC/TOF-MS with nozzle-skimmer fragmentation for comprehensive quantitative analysis of secondary metabolites in Arabidopsis thaliana.
    J. Sep. Sci., 34(24): 3587-3596 (2011).
    doi: 10.1002/jssc.201100552.
  37. *Okazawa A, Hori K, Okumura R, Izumi Y, Naoki H, Bamba T, Fukusaki, E, Ono E, Satake H, Kobayashi A.
    Simultaneous quantification of lignans in Arabidopsis thaliana by highly sensitive capillary liquid chromatography-electrospray ionization-ion trap mass spectrometry.
    Plant Biotechnol., 28(3): 287-293 (2011).
    doi: org/10.5511/plantbiotechnology.11.0221a.
  38. Izumi Y, Okazawa A, Bamba T, Kobayashi A, *Fukusaki E.
    Development of a method for comprehensive and quantitative analysis of plant hormones by highly sensitive nanoflow liquid chromatography-electrospray ionization-ion trap mass spectrometry.
    Anal. Chim. Acta, 648(2): 215-225 (2009).
    doi: 10.1016/j.aca.2009.07.001.
  39. Izumi Y, Kajiyama S, Nakamura R, Ishihara A, Okazawa A, Fukusaki E, Kanematsu Y, *Kobayashi A.
    High-resolution spatial and temporal analysis of phytoalexin production in oats. Planta, 229(4): 931-943 (2009).
    doi: 10.1007/s00425-008-0887-x.
  40. *Igarashi D, Izumi Y, Dokiya Y, Totsuka K, Fukusaki E, Ohsumi C.
    Reproductive organs regulate leaf nitrogen metabolism mediated by cytokinin signal.
    Planta, 229(3): 633-644 (2009).
    doi: 10.1007/s00425-008-0858-2.
  41. Nakamura R, Izumi Y, Kajiyama S, Kobayashi A, *Kanematsu Y.
    Line-Scanning Microscopy for Time-Gated and Spectrally Resolved Fluorescence Imaging.
    J. Biol. Phys., 34(1-2): 51-62 (2008).
    doi: 10.1007/s10867-008-9113-0.
  42. *Kajiyama S, Shoji T, Okuda S, Izumi Y, Fukusaki E, Kobayashi A.
    A novel microsurgery method for intact plant tissue at the single cell level using ArF excimer laser microprojection.
    Biotechnol. Bioeng., 93(2): 325-31 (2006).
    doi: 10.1002/bit.20709.

Review etc.

  1. *Yoshida M, Hatano N, Nishiumi S, Irino Y, Izumi Y, Takenawa T, Azuma T.
    Diagnosis of gastroenterological diseases by metabolome analysis using gas chromatography-mass spectrometry.
    J. Gastroenterol., 47: 9-20 (2012).
    doi: 10.1007/s00535-011-0493-8.

Book

  1. Izumi Y, Takeda H, Bamba T.
    Supercritical Fluid. In “Encyclopedia of Lipidomics”,
    Edited by Markus R. Wenk, Springer Netherlands, 1-3, in press.
    ISBN 978-94-007-7864-1 doi: 10.1007/978-94-007-7864-1_99-1.
  2. Takeda H, Izumi Y, Bamba T.
    Supercritical Fluid Extraction: Modifier. In “Encyclopedia of Lipidomics”,
    Edited by Markus R. Wenk, Springer Netherlands, 1-3, in press.
    ISBN 978-94-007-7864-1 doi: 10.1007/978-94-007-7864-1_101-1.
  3. Takeda H, Izumi Y, Bamba T.
    Supercritical Fluid Extraction: Carbon Dioxide. In “Encyclopedia of Lipidomics”,
    Edited by Markus R. Wenk, Springer Netherlands, 1-3, in press.
    ISBN 978-94-007-7864-1 doi: 10.1007/978-94-007-7864-1_100-1.
  4. *Izumi Y, Lavina WA, Putri SP (Sharing writing).
    Chapter 3: Sample Preparation. Mass Spectrometry-Based Metabolomics: A Practical Guide,
    CRC Press, Boca Raton, Florida, USA, 37-102 (2014).