BAMBA ACHIEVEMENT LIST

Original

  1. Ozeki, M., Nozaki, T., Aoki, J., Bamba, T., Jensen, K.R., Murakami, S., Toyoda, M., Metabolomic Analysis of Gingival Crevicular Fluid Using Gas Chromatography/Mass Spectrometry., Mass Spectrometry., 5(1) doi:10.5702/massspectrometry.A0047. Epub 2016 June 27.
  2. Chun, S., Bamba, T., Suyama, T., Ishijima, T., Fukusaki, E., Abe, K., Nakai, Y., A High Phosphorus Diet Affects Lipid Metabolism in Rat Liver: a DNA Microarray Analysis., PLoS ONE., 11(5), e0155386. doi:10.1371/journal.pone.0155386.
  3. Nakano, Y., Yamashita, T., Okuno, M., Fukusaki, E., Bamba, T., In vivo steroid profiling system for evaluation of endocrine disruptors. J. Biosci. Bioeng., doi:10.1016/j.jbiosc.2016.02.008. Epub 2016 March 12.
  4. Sano, T., Iwahashi, M., Imagi, J., Sato, T., Yamashita, T., Fukusaki, E., Bamba, T., Relationship between 3-methyl-2,4-nonanedione concentration and intensity of light-induced off-odor in soy bean oil., J. Oleo Sci.,65(5), 447-450 (2016). doi: 10.5650/jos.ess15233. Epub 2016 April 15.
  5. Hori, K., Hori-Koriyama, N., Tsumura, K., Fukusaki, E., Bamba, T., Insights into the formation mechanism of chloropropanol fatty acid esters under laboratory-scale deodorization conditions. J. Biosci. Bioeng., 2016 Jan 25. pii: S1389-1723(15)00502-2. doi:10.1016/j.jbiosc.2015.12.018. [Epub ahead of print].
  6. Jumhawan, U., Prama Putri, S.P., Yusianto, Bamba, T., Fukusaki, E., Quantification of coffee blends for authentication of Asian palm civet coffee (Kopi Luwak) via metabolomics: a proof of concept. J. Biosci. Bioeng., 122(1), 79-84 (2016). doi:10.1016/j.jbiosc.2015.12.008..
  7. Noguchi, S., Putri, S.P., Lan, E.I., Laviña, W.A., Dempo, Y., Bamba, T., Liao, J.C., *Fukusaki, E., Quantitative target analysis and kinetic profiling of acyl-CoAs reveal the rate-limiting step in cyanobacterial 1-butanol production. Metabolomics, 12(2), 1-10 (2016). doi: 10.​1007/​s11306-015-0940-2.
  8. Mitsunaga, H., Meissner, L., Palmen, T., Bamba, T., Büchs, J., *Fukusaki, E., Metabolome analysis reveals the effect of carbon catabolite control on the poly(γ-glutamic acid) biosynthesis of Bacillus licheniformis ATCC 9945. J. Biosci. Bioeng., 121(4), 413-419 (2016). pii: S1389-1723(15)00327-8. doi: 10.1016/j.jbiosc.2015.08.012. Epub 2015 Sep 26.
  9. Kakuta, S., Nishiumi, S., Yoshida, M., Fukusaki, E., Bamba, T., Profiling of volatile compounds in APCMin/+ mice blood by dynamic headspace extraction and gas chromatography/mass spectrometry. J. Chromatogr. B Analyt Technol Biomed Life Sci., 1003, 35-40 (2015). doi: 10.1016/j.jchromb.2015.09.002. Epub 2015 Sep 11.
  10. Teoh, S.T., Putri, S., Mukai, Y., Bamba, T., Fukusaki, E., A metabolomics-based strategy for identification of gene targets for phenotype improvement and its application to 1-butanol tolerance in Saccharomyces cerevisiae. Biotechnol. Biofuels, 8:144 (2015). doi: 10.1186/s13068-015-0330-z. eCollection 2015.
  11. Ohta, E., Nakayama, Y., Mukai, Y., Bamba, T., *Fukusaki, E., Metabolomic approach for improving ethanol stress tolerance in Saccharomyces cerevisiae. J. Biosci. Bioeng., 2015 Sep 3. pii: S1389-1723(15)00303-5. doi: 10.1016/j.jbiosc.2015.08.006. [Epub ahead of print]
  12. Konya, Y., Bamba, T., *Fukusaki, E., Extra-facile chiral separation of amino acid enantiomers by LC-TOFMS analysis. J. Biosci. Bioeng., 121(3), 349–353 (2016). pii: S1389-1723(15)00266-2. doi: 10.1016/j.jbiosc.2015.06.017. Epub 2015 Aug 25.
  13. Takeda, H., Koike, T., Izumi, Y., Yamada, T., Yoshida, M., Shiomi, M., Fukusaki, E., *Bamba, T., Lipidomic analysis of plasma lipoprotein fractions in myocardial infarction-prone rabbits. J. Biosci. Bioeng., 120(4), 476-482 (2015). doi: 10.1016/j.jbiosc.2015.02.015. Epub 2015 Jul 8.
  14. Shimizu, R., Dempo, Y., Nakayama, Y., Nakamura, S., Bamba, T., Fukusaki, E., *Fukui, T., New Insight into the Role of the Calvin Cycle: Reutilization of CO2 Emitted through Sugar Degradation. Sci. Rep., 5:11617 (2015). doi: 10.1038/srep11617.
  15. Jumhawan, U., Putri, S.P., Yusianto, Bamba, T., *Fukusaki, E., Application of gas chromatography/flame ionization detector-based metabolite fingerprinting for authentication of Asian palm civet coffee (Kopi Luwak). J. Biosci. Bioeng., 2015 Apr 22. pii: S1389-1723(15)00104-8. doi: 10.1016/j.jbiosc.2015.03.005. [Epub ahead of print]
  16. Wakabayashi, T., Joseph, B., Yasumoto, S., Akashi, T., Aoki, T., Harada, K., Muranaka, S., Bamba, T.,Fukusaki, E., Takeuchi, Y., Yoneyama, K., Muranaka, T., Sugimoto, Y., *Okazawa, A., Planteose as a storage carbohydrate required for early stage of germination of Orobanche minor and its metabolism as a possible target for selective control. J. Exp. Bot., 66(11), 3085-3097 ‘2015). doi: 10.1093/jxb/erv116. Epub 2015 Mar 28.
  17. *Tsugawa, H., Ohta, E., Izumi, Y., Ogiwara, A., Yukihira, D., Bamba, T., Fukusaki, E., Arita, M., MRM-DIFF: data processing strategy for differential analysis in large scale MRM-based lipidomics studies. Front Genet., 5, 471 (2015). doi: 10.3389/fgene.2014.00471. eCollection 2014.
  18. Ishibashi, M., Izumi, Y., Sakai, M., Ando, T., Fukusaki, E., *Bamba, T., High-throughput simultaneous analysis of pesticides by supercritical fluid chromatography coupled with high-resolution mass spectrometry. J. Agric. Food. Chem., in press.
  19. Ogura, T., Bamba, T., Tai, A., *Fukusaki, E., Method for the Compound Annotation of Conjugates in Nontargeted Metabolomics Using Accurate Mass Spectrometry, Multistage Product Ion Spectra and Compound Database Searching. Mass Spectrometry, 4(1), A0036 (2015).
  20. Kakuta, S., Yamashita, T., Nishiumi, S., Yoshida, M., Fukusaki, E., *Bamba, T., Multi-component profiling of trace volatiles in blood by gas chromatography/mass spectrometry with dynamic headspace extraction. Mass Spectrometry, 4(1), A0034 (2015).
  21. Hori, K., Tsumura, K., Fukusaki, E., *Bamba, T., High-throughput analysis of sucrose fatty acid esters by supercritical fluid chromatography/tandem mass spectrometry. Mass Spectrometry, 3(1), A0033 (2014).
  22. Gheni, G., Ogura, M., Iwasaki, M., Yokoi, N., Minami, K., Nakayama, Y., Harada, K., Hastoy, B., Wu, X., Takahashi, H., Kimura, K., Matsubara, T., Hoshikawa, R., Hatano, N., Sugawara, K., Shibasaki, T., Inagaki, N., Bamba, T., Mizoguchi, A., Fukusaki, E., Rorsman, P., *Seino, S., Glutamate acts as a key signal linking glucose metabolism to incretin/cAMP action to amplify insulin secretion. Cell Rep., 9(2), 661-673 (2014). doi: 10.1016/j.celrep.2014.09.030. Epub 2014 Oct 16.
  23. Nakayama, Y., Tamada, Y., Tsugawa, H., Bamba, T., *Fukusaki, E., Novel strategy for non-targeted isotope-assisted metabolomics by means of metabolic turnover and multivariate analysis. Metabolites, 4(3):722-739 (2014). doi: 10.3390/metabo4030722.
  24. Taguchi, K., Fukusaki, E., *Bamba, T., Simultaneous analysis for water- and fat-soluble vitamins by a novel single chromatography technique unifying supercritical fluid chromatography and liquid chromatography. J. Chromatogr. A, 1362, 270-277 (2014). doi: 10.1016/j.chroma.2014.08.003. Epub 2014 Aug 12.
  25. Matsubara, A., Izumi, Y., Nishiumi, S., Suzuki, M., Azuma, T., Fukusaki, E., *Bamba, T., *Yoshida, M., Supercritical fluid extraction as a preparation method for mass spectrometry of dried blood spots. J. Chromatogr B Analyt Technol Biomed Life Sci., 969, 199-204 (2014). doi: 10.1016/j.jchromb.2014.08.013. Epub 2014 Aug 17.
  26. An, P. N. T., Yamaguchi, M., *Bamba, T., *Fukusaki, E., Metabolome analysis of Drosophila melanogaster during embryogenesis. PLoS ONE, 9(8):e99519 (2014). doi: 10.1371/journal.pone.0099519. eCollection 2014.
  27. Mimura, N., Isogai, A., Iwashita, K., Bamba, T., *Fukusaki, E., Gas chromatography/mass spectrometry based component profiling and quality prediction for Japanese sake. J. Biosci. Bioeng., 118(4), 406-414 (2014). doi: 10.1016/j.jbiosc.2014.04.006. Epub 2014 Jul 22.
  28. Rahman, M., Nirala N.K., Singh, A., Zhu, L.J., Taguchi, K., Fukusaki, E., Bamba, T., Shaw, L.M., Lambright, D.G., Acharya, J.K., *Acharya, U.R., Drosophila Sirt2/mammalian SIRT3 deacetylates ATP synthase B and regulates mitochondrial complex V activity. J Cell Biol., 206(2), 289-305 (2014). doi: 10.1083/jcb.201404118. Epub 2014 Jul 14.
  29. Hashim Z, Mukai Y, Bamba T, *Fukusaki E., Metabolic profiling of retrograde pathway transcription factors rtg1 and rtg3 knockout yeast. Metabolites. 4(3), 580-598 (2014). doi: 10.3390/metabo4030580.
  30. Hashim, Z., Teoh, S. T., Bamba, T., *Fukusaki, E., Construction of a metabolome library for transcription factor-related single gene mutants of Saccharomyces cerevisiae. J. Chromatogr. B Analyt. Technol. Biomed. Life Sci., 966, 83-92 (2014). doi: 10.1016/j.jchromb.2014.05.041. Epub 2014 May 27.
  31. Dempo, Y., Ohta, E., Nakayama, Y., Bamba, T., *Fukusaki, E., Molar-based targeted metabolic profiling of cyanobacterial strains with potential for bioproduction. Metabolites, 4(2), 499-516. doi: 10.3390/metabo4020499.
  32. Shiga, K., Yamamoto, S., Nakajima, A., Kodama, Y., Imamura, M., Sato, T., Uchida, R., Obata, A., Bamba, T., *Fukusaki, E., Metabolic Profiling Approach to Explore the Compounds Related to the Umami of Soy Sauce. J. Agric. Food. Chem., 62(29):7317-7322 (2014). doi: 10.1021/jf501173r. Epub 2014 Jul 11.
  33. Taguchi, K., Fukusaki, E., *Bamba, T., Determination of niacin and its metabolites using supercritical fluid chromatography coupled to tandem quad mass spectrometry. Mass Spectrometry, 3(1), A0029 (2014).
  34. Miyauchi, S., Yuki, T., Fuji, H., Kojima, K., Yonetani, T., Tomio, A., Bamba, T., *Fukusaki, E., High-quality green tea leaf production by artificial cultivation under growth chamber conditions considering amino acids profile. J. Biosci. Bioeng.,2014 Jun 7. pii: S1389-1723(14)00161-3. doi: 10.1016/j.jbiosc.2014.05.008. [Epub ahead of print].
  35. Nakayama, Y., Putri, S.P., Bamba, T., *Fukusaki, E., Metabolic distance estimation based on principle component analysis of metabolic turnover. J. Biosci. Bioeng., 118(3), 350-355 (2014). doi: 10.1016/j.jbiosc.2014.02.014. Epub 2014 Mar 26.
  36. Lee, J.W., Nagai, T., Gotoh, N., Fukusaki, E., *Bamba, T., Profiling of regioisomeric triacylglycerols in edible oils by supercritical fluid chromatography/tandem mass spectrometry. J. Chromatogr. B Analyt. Technol. Biomed. Life Sci., 966, 193-199 (2014). doi: 10.1016/j.jchromb.2014.01.040. Epub 2014 Feb 3.
  37. Yamamoto, S., Shiga, K., Kodama, Y., Imamura, M., Uchida, R., Obata, A., Bamba, T., *Fukusaki, E., Analysis of the correlation between dipeptides and taste differences among soy sauces by using metabolomics-based component profiling. J. Biosci. Bioeng., 118(1), 56-63 (2014). doi: 10.1016/j.jbiosc.2013.12.019. Epub 2014 Feb 1.
  38. Kajiwara, K., Yamada, T., Bamba, T., Fukusaki, E., Imamoto, F., *Okada, M., Oneyama, C., c-Src-induced activation of ceramide metabolism impairs membrane microdomains and promotes malignant progression by facilitating the translocation of c-Src to focal adhesions. Biochem. J., 458(1), 81-93 (2014). doi: 10.1042/BJ20130527.22. [Epub ahead of print]
  39. Sangwallek, J., Kaneko, Y., Sugiyama, M., Ono, H., Bamba, T., Fukusaki, E., *Harashima, S., Ketoacyl synthase domain is a major determinant for fatty acyl chain length in Saccharomyces cerevisiae. Arch. Microbiol., 195(12), 843-852 (2013). doi: 10.1007/s00203-013-0933-3. Epub 2013 Nov 8.
  40. Ochi, H., Sakai, Y., Koishihara, H., Abe, F., Bamba, T., *Fukusaki, E., Monitoring the ripening process of Cheddar cheese based on hydrophilic component profiling using gas chromatography/mass spectrometry. J. Dairy Sci., 96(12), 7427-7441 (2013). doi: 10.3168/jds.2013-6897. Epub 2013 Oct 17.
  41. Satomura, A., Katsuyama, Y., Miura, N., Kuroda, K., Tomio, A., Bamba, T., Fukusaki, E., *Ueda, M., Acquisition of thermotolerant yeast Saccharomyces cerevisiae by breeding via stepwise adaptation. Biotechnol. Prog., 29(5), 1116-1123 (2013). doi: 10.1002/btpr.1754. Epub 2013 Sep 20.
  42. Sangwallek, J., Kaneko, Y., Tsukamoto, T., Marui, M., Sugiyama, M., Ono, H., Bamba, T., Fukusaki, E., *Harashima, S., Cloning and functional analysis of HpFAD2 and HpFAD3 genes encoding Δ12- and Δ15-fatty acid desaturases in Hansenula polymorpha. Gene, 533(1), 110-118 (2014). doi: 10.1016/j.gene.2013.09.115. Epub 2013 Oct 5.
  43. Kawase, N., Tsugawa, H., Bamba, T., *Fukusaki, E., Different-batch metabolome analysis of Saccharomyces cerevisiae based on gas chromatography/mass spectrometry. J. Biosci. Bioeng., 117(2), 248-255 (2014). doi: 10.1016/j.jbiosc.2013.07.008. Epub 2013 Aug 19.
  44. Matsuura, H., Yamamoto, Y., Muraoka, K., Akaishi, K., Hori, Y., Uemura, K., Tsuji, N., Bamba, T., Harada, K., Miyasaka, H., Kuroda, K., Ueda, M., *Hirata, K., Development of surface-engineered yeast cells displaying phytochelatin synthase and their application to cadmium biosensors by the combined use of pyrene-excimer fluorescence. Biotechnol. Prog., 29(5), 1197-1202 (2013). doi: 10.1002/btpr.1789. Epub 2013 Aug 28.
  45. *Zaitsu, K., Miyawaki, I., Bando, K., Horie, H., Shima, N., Katagi, M., Tatsuno, M., Bamba, T., Sato, T., Ishii, A., Tsuchihashi, H., Suzuki, K., Fukusaki, E., Metabolic profiling of urine and blood plasma in rat models of drug addiction on the basis of morphine-, methamphetamine- and cocaine-induced conditioned place preference. Anal. Bioanal. Chem., 406(5), 1339-1354 (2014). doi: 10.1007/s00216-013-7234-1. Epub 2013 Aug 4.
  46. *Fukui, T., Chou, K., Harada, K., Orita, I., Nakayama, Y., Bamba, T., Nakamura, S., Fukusaki, E., Metabolite profiles of polyhydroxyalkanoate-producing Ralstonia eutropha H16. Metabolomics, 10, 190-202 (2014). doi: 10.1007/s11306-013-0567-0.
  47. Jumhawan, U., Putri, S.P., Yusianto, Marwani, E., Bamba, T., Fukusaki, E., Selection of discriminant markers for authentication of Asian palm civet coffee (Kopi Luwak): a metabolomics approach. J. Agric. Food Chem., 61(33), 7994-8001 (2013). doi: 10.1021/jf401819s. Epub 2013 Aug 12.
  48. Tsugawa, H., Tsujimoto, Y., Sugitate, K., Sakui, N., Nishiumi, S., Bamba, T., *Fukusaki, E., Highly sensitive and selective analysis of widely targeted metabolomics using gas chromatography/triple-quadrupole mass spectrometry. J. Biosci. Bioeng., 117(1), 122-128 (2013). doi: 10.1016/j.jbiosc.2013.06.009. Epub 2013 Jul 16.
  49. Nirala, N.K., Rahman, M., Walls, S.M., Singh, A., Zhu, L. J., Bamba, T., Fukusaki, E., Srideshikan S.M., Harris, G.L., Ip, Y.T., Bodmer, R., *Acharya, U., Survival response to increased ceramide involves metabolic adaptation through novel regulators of glycolysis and lipolysis. PLOS Genetics, 9(6), e1003556 (2013). doi: 10.1371/journal.pgen.1003556. Epub 2013 Jun 20.
  50. Wada,Y., Matsubara, A., Uchikata, T., Iwasaki, Y., Morimoto, S., Kan, K., Okura, T., Fukusaki, E., *Bamba, T., Investigation of b-cryptoxanthin fatty acid ester compositions in citrus fruits cultivated in Japan. Food and Nutrition Sciences, 4, 98-104 (2013). doi: 10.4236/fns.2013.49A1016.
  51. Yamada, T., Uchikata, T., Sakamoto, S., Yokoi, Y., Nishiumi, S., Yoshida, M., Fukusaki, E., *Bamba, T., Supercritical fluid chromatography/Orbitrap mass spectrometry based lipidomics platform coupled with automated lipid identification software for accurate lipid profiling. J. Chromatogra. A, 1301, 237-242 (2013). doi: 10.1016/j.chroma.2013.01.078. Epub 2013 Jan 25.
  52. Ogura, T., Bamba, T., *Fukusaki, E., Development of a practical metabolite identification technique for non-targeted metabolomics. J. Chromatogra. A, 1301, 73-79 (2013). doi: 10.1016/j.chroma.2013.05.054. Epub 2013 May 29.
  53. *Fujieda Y, Manno A, Hayashi Y, Rhodes N, Guo L, Arita, M., Bamba, T., *Fukusaki, E., Inflammation and resolution are associated with upregulation of fatty acid β-oxidation in zymosan-induced peritonitis. PLoS ONE, 8(6),e66270 (2013). doi: 10.1371/journal.pone.0066270. Print 2013.
  54. Taguchi, K., Fukusaki, E., *Bamba, T., Simultaneous and rapid analysis of bile acids including conjugates by supercritical fluid chromatography coupled to tandem mass spectrometry. J. Chromatogra. A, 1299, 103-109 (2013). doi: 10.1016/j.chroma.2013.05.043. Epub 2013 May 28.
  55. *Tsugawa, H., Arita, M., Kanazawa, M., Ogiwara, A., Bamba, T., Fukusaki, E., MRMPROBS: Data Assessment and Metabolite Identification Tool for Large-scale MRM-based Widely Targeted Metabolomics. Anal. Chem., 85(10), 5191-9 (2013). doi: 10.1021/ac400515s. Epub 2013 May 1.
  56. Yamada, T., Uchikata, T., Sakamoto, S., Yokoi, Y., Fukusaki, E., *Bamba, T., Development of a lipid profiling system using reverse-phase liquid chromatography coupled to high-resolution mass spectrometry with rapid polarity switching and an automated lipid identification software. J. Chromatogra. A, 1292, 211-218 (2013). doi: 10.1016/j.chroma.2013.05.057. Epub 2013 Jun 1.
  57. Lee, J.W., Nishiumi, S., Yoshida, M., Fukusaki, E., *Bamba, T., Simultaneous profiling of polar lipids by supercritical fluid chromatography/tandem mass spectrometry with methylation. J. Chromatogra. A, 1279, 98-107 (2013). doi: 10.1016/j.chroma.2013.01.020. Epub 2013 Jan 10.
  58. Takebayashi, K., Hirose, K., Izumi, Y., Bamba, T., *Fukusaki, E., Application of ion mobility-mass spectrometry to microRNA analysis. J. Biosci. Bioeng., 115(3), 332-328 (2013). doi: 10.1016/j.jbiosc.2012.10.006. Epub 2012 Nov 30.
  59. Kakuta, S., Bando, Y., Nishiumi, S., Yoshida, M., Fukusaki, E., *Bamba, T., Metabolic profiling of oxidized lipid-derived volatiles in blood by gas chromatography/mass spectrometry with in-tube extraction. Mass Spectrometry, 2, A0018 (2013). doi: 10.5702/massspectrometry.A0018.
  60. Lai, P., *Okazawa, A., Izumi, Y., Bamba, T., Fukusaki, E., Yoshikawa, M., Kobayashi, A., Effect of gallic acid on peptides released by trypsin digestion of bovine α-casein. J. Biosci. Bioeng., 114(3), 297-305 (2012). doi: 10.1016/j.jbiosc.2012.10.003. Epub 2012 Nov 17.
  61. Chen, R., Harada, Y., Bamba, T., *Nakazawa, Y., Gyokusen, K., Overexpression of an isopentenyl diphosphate isomerase gene to enhance trans-polyisoprene production in Eucommia ulmoides Oliver. BMC Biotechnol., 12, 78 (2012). doi: 10.1186/1472-6750-12-78.
  62. Ishibashi, M., Ando, T., Sakai, M., Matsubara, A., Uchikata, T., Fukusaki, E., *Bamba, T., High-throughput simultaneous analysis of pesticides by supercritical fluid chromatography/tandem mass spectrometry. J. Chromatogra. A, 1266, 143-148 (2012). doi: 10.1016/j.chroma.2012.09.067. Epub 2012 Sep 28.
  63. *Fujieda, Y., Ueno, S., Ogino, R., Kuroda, M., Jönsson, T. J., Guo, L., Bamba, T., *Fukusaki, E., Metabolite profiles correlate closely with neurobehavioral function in experimental spinal cord injury in rats. PLoS One, 7(8), e43152 (2012). doi: 10.1371/journal.pone.0043152. Epub 2012 Aug 13.
  64. Suzuki, N., Uefuji, H., Nishikawa, T., Mukai, Y., Yamashita, A., Hattori, M., Ogasawara, N., Bamba, T., Fukusaki, E., Kobayashi, A., Ogata, Y., Sakurai, N., Suzuki, H., Shibata, D., *Nakazawa, Y., Construction and analysis of EST libraries of the trans-polyisoprene producing plant, Eucommia ulmoides Oliver. Planta, 236(5), 1405-1417 (2012). doi: 10.1007/s00425-012-1679-x. Epub 2012 Jun 24.
  65. Ochi, H., Bamba, T., Naito, H., Iwatsuki, K., *Fukusaki, E., Metabolic fingerprinting of hard and semi-hard natural cheeses using GC/FID for practical sensory prediction modeling. J. Biosci. Bioeng., 114(5), 506-511 (2012). doi: 10.1016/j.jbiosc.2012.06.002. Epub 2012 Jul 21.
  66. Uchikata, T., Matsubara, A., Fukusaki, E., *Bamba, T., High-throughput phospholipid profiling system based on online-supercritical fluid extraction-supercritical fluid chromatography/mass spectrometry for dried plasma spot analysis. J. Chromatogra. A, 1250, 69-75 (2012). doi: 10.1016/j.chroma.2012.06.031. Epub 2012 Jun 17.
  67. Hori, K., Matsubara, A., Uchikata, T., Tsumura, K., Fukusaki, E., *Bamba, T., High-throughput and sensitive analysis of 3-monochloropropane-1,2-diol (3-MCPD) fatty acid esters in edible oils by supercritical fluid chromatography/tandem mass spectrometry. J. Chromatogra. A, 1250, 99-104 (2012). doi: 10.1016/j.chroma.2012.06.017. Epub 2012 Jun 15.
  68. Uchikata, T., Matsubara, A., Nishiumi, S., Yoshida, M., Fukusaki, E., *Bamba, T., Development of oxidized phosphatidylcholine isomer profiling method using supercritical fluid chromatography/tandem mass spectrometry. J. Chromatogra. A, 1250, 205-211 (2012). doi: 10.1016/j.chroma.2012.05.083. Epub 2012 May 30.
  69. Matsubara, A., Harada, K., Hirata, H., Fukusaki, E., *Bamba, T., High-accuracy analysis system for the redox status of coenzyme Q10 by online supercritical fluid extraction- supercritical fluid chromatography/mass spectrometry. J. Chromatogra. A, 1250, 76-79 (2012). doi: 10.1016/j.chroma.2012.05.009. Epub 2012 May 9.
  70. Hasokawa, M., *Shinohara, M., Tsugawa, H., Bamba, T., Fukusaki, E., Nishiumi, S., Nishimura, K., Yoshida, M., Ishida,T., Hirata, K., Identification of biomarkers of stent restenosis with serum metabolomic profiling using gas chromatography/mass spectrometry. Circulation J., 76(8), 1864-1873 (2012). doi: 10.1253/circj.CJ-11-0622. Epub 2012 May 16.
  71. Ping Lai,P., *Okazawa, A., Izumi, Y., Bamba, T., Fukusaki, E., Yoshikawa, M., Kobayashi, A., Gallic acid oxidizes Met-residues in peptides released from bovine b-lactoglobulin by in vitro digestion. J. Biosci. Bioeng., 114(3), 297-305 (2012). doi: 10.1016/j.jbiosc.2012.04.019. Epub 2012 May 30.
  72. Kobayashi, S., Putri, S.P., Yamamoto, Y., Donghyo, K., Bamba, T., Fukusaki, E., GC-MS based metabolic profiling for the identification of discrimination markers of Angelicae Radix and its application to GC-FID system. J. Biosci. Bioeng., 114(2), 232-236 (2012). doi: 10.1016/j.jbiosc.2012.03.022. Epub 2012 May 25.
  73. Kobayashi, S., Nagasawa, S., Yamamoto, Y., Donghyo, K., Bamba, T., *Fukusaki, E., Metabolic profiling and identification of the genetic varieties and agricultural origin of Cnidium officinale and Ligusticum chuanxiong. J. Biosci. Bioeng., 114(1), 86-91 (2012). doi: 10.1016/j.jbiosc.2012.02.015. Epub 2012 May 22.
  74. Yamamoto, S., Bamba, T., Sano, A., Kodama, Y., Imamura, M., Obata, A., *Fukusaki, E., Metabolite profiling of soy sauce using gas chromatography with time-of-flight mass spectrometry and analysis of correlation with quantitative descriptive analysis. J. Biosci. Bioeng., 114(2), 170-175 (2012). doi: 10.1016/j.jbiosc.2012.03.023. Epub 2012 May 19.
  75. Watanabe, I., Harada, K., Matsui, T., Miyasaka, H., Tanaka, S., Nakayama, H., Kato, K., Bamba, T., Hirata, K., Characterization of bisphenol A metabolites produced by Portulaca oleracea cv. using liquid chromatography coupled with tandem mass spectrometry. Biosci.Biotechnol. Biochem., 76(5), 1015-1017 (2012). doi: 10.1271/bbb.110967. Epub 2012 May 7.
  76. Ochi, H., Naito, H., Iwatsuki, K., Bamba, T., *Fukusaki, E., Metabolomics-based component profiling of hard and semi-hard natural cheeses with gas chromatography/time-of-flight-mass spectrometry, and its application to sensory predictive modeling. J. Biosci. Bioeng., 113(6), 751-758 (2012). doi: 10.1016/j.jbiosc.2012.02.006. Epub 2012 Mar 2.
  77. Matsubara, A., Uchikata, T., Shinohara, M., Nishiumi, S., Yoshida, M., Fukusaki, E., *Bamba, T., Highly sensitive and rapid profiling method for carotenoids and their epoxidized products using supercritical fluid chromatography coupled with electrospray ionization- triple quadrupole mass spectrometry. J. Biosci. Bioeng., 113(6), 782-787 (2012). doi: 10.1016/j.jbiosc.2012.01.017. Epub 2012 Feb 29.
  78. Lee, J.W., Yamamoto, T., Uchikata, T., Matsubara, A., Fukusaki, E., *Bamba, T., Development of a polar lipid profiling method by supercritical fluid chromatography/mass spectrometry. J. Sep. Sci., 34(24), 3553-3560, (2011). doi: 10.1002/jssc.201100539.
  79. Izumi, Y., Takimura, S., Yamaguchi, S., Iida, J., Bamba, T., *Fukusaki, E., Application of electrospray ionization ion trap/time-of-flight mass spectrometry for chemically-synthesized small RNAs. J. Biosci. Bioeng., 113(3), 412-419 (2012). doi: 10.1016/j.jbiosc.2011.11.007. Epub 2011 Dec 5.
  80. Sugimoto, T., Bamba, T., Yoshihiro, I., Nomura, H., Shiina, T., *Fukusaki, E., Use of UPLC/TOF-MS with nozzle-skimmer fragmentation for comprehensive quantitative analysis of secondary metabolites in Arabidopsis thaliana. J. Sep. Sci., 34(24), 3587-3596, (2011). doi: 10.1002/jssc.201100552. Epub 2011 Nov 21.
  81. Lee, J.W., Uchikata, T., Matsubara, A., Nakamura, T., Fukusaki, E., *Bamba, T., Application of supercritical fluid chromatography/mass spectrometry to lipid profiling of soybean. J. Biosci. Bioeng., 113(2), 262-268 (2012). doi: 10.1016/j.jbiosc.2011.10.009. Epub 2011 Nov 21.
  82. Wada, Y., Matsubara, A., Uchikata, T., Iwasaki, Y., Morimoto, S., Kan, K., Okura, T., Fukusaki, E., *Bamba, T., Metabolic profiling of b-cryptoxanthin and its fatty acid esters by supercritical fluid chromatography coupled with triple quadrupole mass spectrometry. J. Sep. Sci., 34(24), 3546-3552, (2011). doi: 10.1002/jssc.201100376. Epub 2011 Oct 31.
  83. Ikeda, A., Nishiumi, S., Shinohara, M., Yoshie, T., Hatano, N., Okuno, T., Bamba, T., Fukusaki, E, Takenawa, T., Azuma, T., *Yoshida, M., Serum metabolomics as a novel diagnostic approach for gastrointestinal cancer. Biomed. Chromatogr., 26(5), 548-558 (2012). doi: 10.1002/bmc.1671. Epub 2011 Jul 20.
  84. Jumtee, K., Komura, H., Bamba, T., *Fukusaki, E., Predication of Japanese green tea (Sen-cha) ranking by volatile profiling using gas chromatography mass spectrometry and multivariate analysis. J. Biosci. Bioeng., 112(3), 252-255 (2011). doi: 10.1016/j.jbiosc.2011.05.008. Epub 2011 Jun 12.
  85. *Shima, N., Miyawaki, I., Bando, K., Horie, H., Zaitsu, K., Katagi, M., Bamba, T., Tsuchihashi, H., Fukusaki, E., Influences of methamphetamine-induced acute intoxication on urinary and plasma metabolic profiles in the rat. Toxicology, 287(1-3), 29-37 (2011). doi: 10.1016/j.tox.2011.05.012. Epub 2011 May 27.
  86. Tsugawa, H., Bamba, T., Shinohara, M., Nishiumi, S., Yoshida, M., *Fukusaki, E., Practical non-targeted gas chromatography/mass spectrometry-based metabolomics platform for metabolic phenotype analysis. J. Biosci. Bioeng., 112(3), 292-298 (2011). doi: 10.1016/j.jbiosc.2011.05.001. Epub 2011 Jun 8.
  87. Ono, D., Bamba, T., Oku, Y., Yonetani, T., *Eukusaki, E., Application of Fourier transform near-infrared spectroscopy to optimization of green tea steaming process conditions. J. Biosci. Bioeng., 112(3), 247-251 (2011). doi: 10.1016/j.jbiosc.2011.05.002. Epub 2011 Jun 2.
  88. Matsui, T., Nomura, Y., Takano, M., Imai, S., Nakayama, H., Miyasaka, H., Okuhata, H., Takanka, S., Matsuura, H., Harada, K., Bamba, T., Hirata, K., *Kato, K., Molecular cloning and partial characterization of a peroxidase gene expressed in poots of Portulaca oleracea cv. that is potentially useful for the remediation of phenolic pollutants. Biosci.Biotechnol. Biochem., 75(5), 882-890 (2011). doi: 10.1271/bbb.100823. Epub 2011 May 20.
  89. Tsugawa, H., Tsujimoto, Y., Arita, M., Bamba, T., *Fukusaki, E., GC/MS based metabolomics: development of a data mining system for metabolite identification by using soft independent modeling of class analogy (SIMCA). BMC Bioinformatics, 12, 131 (2011). doi: 10.1186/1471-2105-12-131.
  90. Miyoshi, K., *Matsuura, H., Kumon, T., Matsuda, K., Yoshikawa, T., Bamba, T., Harada, K., Hirata, K., Isolation and partial characterization of the Chlamydomonas reinhardtii γ-glutamyl kinase. J. Biosci. Bioeng., 112(1), 75-78 (2011). doi: 10.1016/j.jbiosc.2011.02.012. Epub 2011 Mar 27.
  91. Hori, S., Nishiumi, S., Kobayashi, K., Shinohara, M., Hatakeyama, Y.,Kotani, Y., Hatano, N., Maniwa, Y., Nishio, W., Bamba, T., Fukusaki, E., Azuma, T., Takenawa, T., Nishimura, Y., *Yoshida, M., A metabolomic approach to detect early stages of lung cancers. Lung Cancer, 74(2), 284-292 (2011). doi: 10.1016/j.lungcan.2011.02.008. Epub 2011 Mar 15.
  92. *Okazawa, A., Hori, K., Okumura, R., Izumi, Y., Hata, N., Bamba, T., Fukusaki, E., Ono, E., Satake, H., Kobayashi, A., Simultaneous lignanquantification in Arabidopsis thaliana by a highly sensitive capillary liquid chromatography-electrospray ionization-ion trap mass spectrometry. PlantBiotechnol., 28, 287-293 (2011). doi: 10.5511/plantbiotechnology.11.0221a.
  93. Yonamine, I., Bamba, T., Nirala, N., Jesmin, N., Kosakowska-Cholody, T., Nagashima, K., Fukusaki, E., Acharya, J.K., *Acharya, U., Sphingosine Kinases and their metabolites modulate endolysosomal trafficking in photoreceptors. J. Cell Biol., 192(4), 557-567 (2011). doi: 10.1083/jcb.201004098. Epub 2011 Feb 14.
  94. Bando, K., Kunimatsu, T., Sakai, J., Kimura, J., Funabashi, H., Seki, T., Bamba, T., *Fukusaki, E., GC-MS-based metabolomics reveals mechanism of action for hydrazine induced hepatotoxicity in rats. J. Appl. Toxicol., 31, 524-535 (2011). doi: 10.1002/jat.1591. Epub 2010 Dec 10.
  95. Yuan, C, Rao, R.P., Jesmin, N., Bamba, T., Nagashima, K., Pascual, A., Preat, T., Fukusaki, E., Acharya, U., *Acharya, J.K., CDase is a pan-ceramidase in Drosophila. Mol. Biol. Cell., 22(1), 33-43 (2010). doi: 10.1091/mbc.E10-05-0453. Epub 2010 Dec 9.
  96. *Bamba, T., Murayoshi, M., Gyoksen, K., Nakazawa, Y., Okumoto, H., Kattod, H., Fukusakia, E., Kobayashi, A., Contribution of mevalonate and methylerythritol phosphate pathways to polyisoprenoid Biosynthesis in a rubber-producing plant, Eucommia ulmoides Oliver. Z. Naturforsch [C], 65(5-6), 363-372 (2010).
  97. Bando, K., Kawahara, R., Kunimatsu, T., Sakai, J., Kimura, J., Funabashi, H., Seki, T., Bamba, T., *Fukusaki, E., Influences of biofluid sample collection and handling procedures on GC-MS based metabolomics studies. J. Biosci. Bioeng., 110(4), 491-499 (2010). doi: 10.1016/j.jbiosc.2010.04.010. Epub 2010 Jun 18.
  98. Asano, M., Harada, K., Yoshikawa, T,, Bamba, T., *Hirata, K., Synthesis of anti-tumor dimeric indole alkaloids in catharanthus roseus was promoted by irradiation with near-ultraviolet light at low temperature. Biosci. Biotechnol. Biochem., 74(2), 386-389 (2010). doi: 10.1271/bbb.90545. Epub 2010 Feb 7.
  99. *Kakuta, H., Fukai, R., Xiaoxia, Z., Ohsawa, F., Bamba, T., Hirata, K., Tai, A., Identification of urine metabolites of TFAP, a cyclooxygenase-1 inhibitor. Bioorg. Med. Chem. Lett., 20(6), 1840-1843 (2010). doi: 10.1016/j.bmcl.2010.01.161. Epub 2010 Feb 6.
  100. Tianniam, S., Bamba, T., *Fukusaki, E., Pyrolysis GC-MS-based metabolite fingerprinting for quality evaluation of commercial Angelica acutiloba roots. J. Biosci. Bioeng., 109 (1), 89-93 (2010). doi: 10.1016/j.jbiosc.2009.06.025. Epub 2009 Jul 23.
  101. Takeno, S., Bamba, T., Nakazawa, Y., Fukusaki, E., Okazawa, A., *Kobayashi, A., High-throughput and highly sensitive analysis method for polyisoprene in plants by pyrolysis-gas chromatography/mass spectrometry. Biosci. Biotechnol. Biochem., 74(1),13-17 (2010). doi: 10.1271/bbb.80882. Epub 2010 Jan 7.
  102. Dasgupta, U., Bamba, T., Chiantia, S., Karim, P., Tayoun, A. A., Yonamine, I., Rawat, S., Rao, R. P., Nagashima, K., Fukusaki, E., Puri, V., Dolph, P., Schwille, P., Acharya, J., *Acharya, U., Ceramide Kinase Regulates PLC and PIP2 in Phototransduction. Proc. Natl. Acad. Sci. USA, 106(47), 20063-20068 (2009). doi: 10.1073/pnas.0911028106. Epub 2009 Nov 5.
  103. Suda, Y., Yoshikawa, T., Okuda, Y., Tsunemoto, M., Matsuda, Y., Tanaka, S., Ikeda, K., Miyasaka, H., Harada, K., Bamba, T., Hirata, K., Comparative analysis of a CFo ATP synthase subunit II homologue derived from marine and fresh-water algae. J. Biosci. Bioeng., 108(5), 365-368 (2009). doi: 10.1016/j.jbiosc.2009.05.017. Epub 2009 Jul 17.
  104. Izumi Y, Okazawa A, Bamba, T., Kobayashi A, *Fukusaki E., Development of a method for comprehensive and quantitative analysis of plant hormones by highly sensitive nanoflow liquid chromatography-electrospray ionization-ion trap mass spectrometry. Anal. Chim. Acta, 648(2), 215-225 (2009). doi: 10.1016/j.aca.2009.07.001. Epub 2009 Jul 4.
  105. Jumtee K, Bamba, T., *Fukusaki E., Fast GC-FID based metabolic fingerprinting of Japanese green tea leaf for its quality ranking prediction. J. Sep. Sci., 32(13), 2296-2304 (2009). doi: 10.1002/jssc.200900096.
  106. Tianniam S, Bamba, T., *Fukusaki E., Non-targeted metabolite fingerprinting of oriental folk medicine Angelica acutiloba roots by ultra performance liquid chromatography time-of-flight mass spectrometry. J. Sep. Sci., 32(13), 2233-2244 (2009). doi: 10.1002/jssc.200900121.
  107. Matsubara, A., *Bamba, T., Ishida, H., Fukusaki, E., Hirata, K., Highly sensitive and accurate profiling of carotenoids by supercritical fluid chromatography coupled with mass spectrometry. J. Sep. Sci., 32(9), 1459-1464 (2009). doi: 10.1002/jssc.200800699.
  108. Oishi, T., Tanaka, K., Hashimoto, T., Shinbo, Y., Jumtee, K., Bamba, T., Fukusaki, E., Suzuki, H., Shibata, D., Takahashi, H., Asahi, H., Kurokawa, K., Nakamura, Y., Hirai, A., Nakamura, K., Altaf-Ul-Amin, M., *Kanaya, S., An approach to peak detection in GC-MS chromatograms and application of KNApSAcK database in prediction of candidate metabolites. Plant Biotechnol., 26(1), 167-174 (2009). doi: 10.5511/plantbiotechnology.26.167.
  109. *Nakazawa, Y., Bamba, T., Takeda, T., Uefuji, H., Harada, Y., Li, X., Chen, R., Inoue, S., Tutumi, M., Shimizu, T., Su, Y.Q., Gyokusen, K., Fukusaki, E., Kobayashi, A., Production of Eucommia-rubber from Eucommia ulmoides Oliv. (Hardy Rubber Tree). Plant Biotechnol., 26(1), 71-79 (2009). doi: 10.5511/plantbiotechnology.26.71.
  110. Karseno, *Harada, K., Bamba, T.., Dwi, S., Mahakhant, A., Yoshikawa, T., Hirata, K., Extracellular phycoerythrin-like protein released by freshwater cyanobacteria Oscillatoria and Scytonema sp. Biotechnol. Lett., 31(7), 999-1003 (2009). doi: 10.1007/s10529-009-9964-x. Epub 2009 Mar 7.
  111. Suda, Y., Yoshikawa, T., Okuda, Y., Tsunemoto, M., Tanaka, S., Ikeda, K., Miyasaka, H., Watanabe, M., Sasaki, K., Harada, K., Bamba, T., *Hirata, K., Isolation and characterization of a novel antistress gene from Chlamydomonas sp. W80. J. Biosci. Bioeng., 107(4), 352-354 (2009). doi: 10.1016/j.jbiosc.2008.12.019.
  112. Hori, Y., Yoshikawa, T., Tsuji, N., Bamba, T., Aso, Y., Kudou, M., Uchida, Y., Takagi, M., Harada, K., *Hirata, K., Phytochelatins inhibit the metal-induced aggregation of a-crystallin. J. Biosci. Bioeng., 107(2),173-176 (2009). doi: 10.1016/j.jbiosc.2008.09.021.
  113. Takeno, S., Bamba, T., Nakazawa, Y., Fukusaki, E., Okazawa, A., *Kobayashi, A., A high-throughput and solvent-free method for measurement of natural polyisoprene content in leaves by Fourier transform near infrared spectroscopy. J. Biosci. Bioeng., 106(6), 537-540 (2008). doi: 10.1263/jbb.106.537.
  114. Pongsuwan, W., Bamba, T., Harada, K., Yonetani, T., Kobayashi, A., *Fukusaki, E., A high throughput technique for comprehensive analysis of Japanese Green Tea Quality Assessment Utilizing UPLC/TOF MS. J. Agric. Food. Chem., 56(22), 10705-10708 (2008). doi: 10.1021/jf8018003.
  115. *Chen., R., Namimatsu, S., Nakadozono, Y., Bamba, T., Nakazawa, Y., Gyokusen, K., Efficient regeneration of Eucommia ulmoides from hypocotyl explant. Biologia Plantarum, 52 (4), 713-717 (2008). dio: 10.1007/s10535-008-0137-x.
  116. Okajima, MK., Bamba, T., Kaneso, Y., Hirata, K., Fukusaki, E., Kajiyama, S., *Kaneko, T., Supergiant ampholytic sugar chains with imbalanced charge ratio form saline ultra-absorbent hydrogels. Macromolecule, 41(12), 4061-4064 (2008). doi: 10.1021/ma800307w.
  117. Tianniam, S., Tarachiwin, L., Bamba, T., Kobayashi, A., *Fukusaki, E., Metabolic profiling of Angelica acutiloba roots utilizing gas chromatography time-of-flight mass spectrometry for quality assessment based on cultivation area and cultivar via multivariate pattern recognition. J. Biosci. Bioeng., 105(6), 655-659 (2008). doi: 10.1263/jbb.105.655.
  118. Hasunuma, T., Takeno, S., Hayashi, H., Sendai, M., Bamba, T., Yoshimura, S., Tomizawa, K., Fukusaki, E., *Miyake, C., Overexpression of 1-deoxy-D-xylulose-5-phosphate reductoisomerase gene in chloroplast contributes to increment of isoprenoid production. J. Biosci. Bioeng., 105(5), 518-526 (2008). doi: 10.1263/jbb.105.518.
  119. Bamba, T., Shimonishi, N., Matsubara, A., Hirata, H., Nakazawa, Y., *Fukusaki, E., Kobayashi A., A high throughput and exhaustive analysis of diverse lipids by using supercritical fluid chromatography-mass spectrometry for metabolomics. J. Biosci. Bioeng., 105(5), 460-469 (2008). doi: 10.1263/jbb.105.460.
  120. Takeno, S., Bamba, T., Nakazawa, Y., Fukusaki, E., Okazawa, A., *Kobayashi, A., Quantification of trans-1,4-polyisoprene in Eucommia ulmoides by Fourier transform infrared spectroscopy and pyrolysis-gas chromatography / mass spectroscopy. J. Biosci. Bioeng., 105(4), 355-359 (2008). doi: 10.1263/jbb.105.355.
  121. Jumtee, K., Bamba, T., *Okazawa, A., Fukusaki, E., Kobayashi, A., Integrated metabolite and gene expression profiling revealing phytochrome A regulation of polyamine biosynthesis of Arabidopsis thaliana. J. Exp. Bot., 59(6), 1187-1200 (2008). doi: 10.1093/jxb/ern026. Epub 2008 Mar 28.
  122. Pongsuwan, W., Bamba, T., Yonetani, T., Yamahara, T., Kobayashi, A., *Fukusaki, E., Quality prediction of Japanese green tea using pyrolyzer coupled GC/MS based metabolic fingerprinting. J. Agric. Food. Chem., 56(3), 744-750 (2008). doi: 10.1021/jf072791v. Epub 2008 Jan 9.
  123. Prasitchoke, P., Kaneko, Y., Bamba, T., Fukusaki, E., Kobayashi, A., *Harashima, S., The essential fatty acid myristate causes severe growth retardation in Hpelo disruptants of the yeast Hansenula polymorpha. Arch. Microbiol., 189(4), 297-304 (2008). doi: 10.1007/s00203-007-0317-7. Epub 2007 Nov 9.
  124. Bamba, T., Sando, T., Miyabashira, A., Gyoksen, K., Nakazawa, Y., Su, Y., *Fukusaki, E., Kobayashi A., Periploca sepium Bunge as a model plant for rubber biosynthesis study. Z. Naturforsch. [C], 62(7-8), 579-582 (2007).
  125. Imai, S., Shiraishi, A., Gamo, K., Watanabe, I., Okuhata, H., Miyasaka, H., Ikeda, H., Bamba, T., *Hirata, K., Removal of phenolic endocrine disruptors by Portulaca oleracea. J. Biosci. Bioeng., 103(5), 420-426 (2007). doi: 10.1263/jbb.103.420.
  126. Prasitchoke, P., Kaneko, Y., Sugiyama, M., Bamba, T.., Fukusaki, E., Kobayashi, A., *Harashima, S., Functional analysis of very long-chain fatty acid elongase gene, HpELO2, in the methylotrophic yeast Hansenula polymorpha. Appl. Microbiol. Biotechnol., 76(2), 417-427 (2007). doi: 10.1007/s00253-007-1012-y. Epub 2007 May 23.
  127. Prasitchoke, P., Kaneko, Y., Sugiyama, M., Bamba, T., Fukusaki, E., Kobayashi, A., *Harashima, S., Identification and characterization of a very long-chain fatty acid elongase gene in the methylotrophic yeast, Hansenula polymorpha. Gene, 391(1-2), 16–25 (2007). doi: 10.1016/j.gene.2006.11.013. Epub 2006 Nov 28.
  128. Pongsuwan, W., *Fukusaki, E., Bamba, T., Yonetani, T., Yamahara, T., Kobayashi, A., Prediction of Japanese green tea ranking by gas chromatography/mass spectrometry-based hydrophilic metabolite fingerprinting. J. Agric. Food. Chem., 55 (2), 231-236 (2007). doi: 10.1021/jf062330u.
  129. Kim, J. K., Bamba, T., Harada, K., *Fukusaki, E., Kobayashi, A., Time course metabolic profiling in Arabidopsis thaliana cell cultures after salt stress treatment. J. Exp. Bot., 58(3), 415–424 (2007). doi: 10.1093/jxb/erl216. Epub 2006 Nov 21.
  130. Harada, K., *Fukusaki, E., Bamba, T., Sato, F., Kobayashi, A., In vivo 15N-enrichment of metabolites in suspension cultured cells and its application to metabolomics. Biotechnol. Prog., 22(4), 1003-1011 (2006). doi: 10.1021/bp060139z.
  131. *Fukusaki, E., Jumtee, K., Bamba, T., Yamaji, T., Kobayashi, A., Metabolic fingerprinting and profiling of Arabidopsis thaliana leaf and its cultured cells T87 by GC/MS. Z. Naturforsch [C], 61(3-4), 267-272 (2006).
  132. *Ute, K., Yoshida, S., Kitayama, T., Bamba, T., Harada, K., Fukusaki, E., Kobayashi, A., Ishizuka, N., Minakuchi, H., Nakanishi, K., Size exclusion chromatography of standard polystyrenes with a wide range of molecular weight Up to 7.45×106 on monolithic silica capillary columns. Polymer J., 38(11), 1194–1197 (2006). doi: 10.1295/polymj.PJ2006079.
  133. Suppasil Maneerat, S., Bamba, T., Harada, K., Kobayashi, A., Yamada, H., *Kawai, F., A novel crude oil emulsifier excreted in the culture supernatant of a marine bacterium, Myroides sp. strain SM1. Appl. Microbiol. Biotechnol., 70, 254–259 (2006). doi: 10.1007/s00253-005-0050-6. Epub 2005 Jul 30.
  134. *Fukusaki, E., Harada, K., Bamba, T., Kobayashi, A., An isotope effect on the comparative quantification of flavonoids by means of methylation-based stable isotope dilution coupled with capillary liquid chromatograph/mass spectrometry. J. Biosci. Bioeng., 99(1), 75-77 (2005). doi: 10.1263/jbb.99.75.
  135. Siddiqui, M. A., Yamanaka, A., Hirooka, K., Bamba, T., Kobayashi, A., Imanaka, T., Fukusaki, E., *Fujiwara, S., Enzymatic and structural characterization of type II isopentenyl diphosphate isomerase from hyperthermophilic archaeon Thermococcus kodakaraensis. Biochem. Biophys. Res. Commun., 331(4), 1127-1136 (2005). doi: 10.1016/j.bbrc.2005.04.029.
  136. Bamba, T., *Fukusaki, E., Minakuchi, H., Nakazawa, Y., Kobayashi, A., Separation of polyprenol and dolichol by monolithic silica capillary column chromatography. J. Lipid Res., 46(10), 2295-2298 (2005). doi: 10.1194/jlr.M500185-JLR200.
  137. Kim, J. K., Harada, K., Bamba, T., *Fukusaki, E., Kobayashi, A., Stable isotope dilution-based accurate comparative quantification of nitrogen-containing metabolites in Arabidopsis thaliana T87 cells using in vivo 15N-isotope enrichment. Biosci. Biotechnol. Biochem., 69(7), 1331-1340 (2005). doi: 10.1271/bbb.69.1331.
  138. Tarachiwin, L., Sakdapipanich, J., Ute, K., Kitayama, T., Bamba, T., Fukusaki, E., Kobayashi, A., *Tanaka, Y., Structural characterization of a-terminal group of natural rubber. 1. Decomposition of branch-points by lipase and phosphatase treatments. Biomacromolecules, 6(4), 1851-1857 (2005). doi: 10.1021/bm058003x.
  139. *Fukusaki, E., Takeno, S., Bamba, T., Okumoto, H., Katto, H., Kajiyama, S., Kobayashi, A., Biosynthetic pathway for the C45 polyprenol, solanesol, in tobacco. Biosci. Biotechnol. Biochem., 68(9), 1988-1990 (2004). doi: 10.1271/bbb.68.1988.
  140. Bamba, T., *Fukusaki, E., Nakazawa, Y., *Kobayashi, A., Rapid and high-resolution analysis separation of geometric polyprenol geometric homologues by the connected octadecylsilylated monolithic silica columns in high-performance liquid chromatography. J. Sep. Sci., 27(4), 293-296 (2004). doi: 10.1002/jssc.200301664.
  141. Bamba, T., Fukusaki, E., Nakazawa, Y., Sato, H., Ute, K., Kitayama, T., *Kobayashi, A., Analysis of long-chain polyprenols using supercritical fluid chromatography and matrix-assisted laser desorption ionization time-of-flight mass spectrometry. J. Chromatogra. A, 995(1-2), 203-207 (2003). doi: 10.1016/S0021-9673(03)00498-9.
  142. Hirooka, K., Bamba, T., Fukusaki, E., *Kobayashi, A., Cloning and kinetic characterization of Arabidopsis thaliana solanesyl diphosphate synthase. Biochem. J., 370(2), 679-686 (2003). doi: 10.1042/BJ20021311.
  143. Marfori, E. C., Bamba, T., Kajiyama, S., Fukusaki, E., *Kobayashi, A., Biosynthetic studies of the tetramic acid antibiotic trichosetin. Tetrahedron, 58(33), 6655-6658 (2002).
  144. Bamba, T., Fukusaki, E., Nakazawa, Y., *Kobayashi, A., In-situ chemical analyses of trans-polyisoprene by histochemical staining and Fourier transform infrared microspectroscopy in a rubber-producing plant. Eucommia ulmoides Oliver. Planta, 215(6), 934-939 (2002). doi: 10.1007/s00425-002-0832-3. Epub 2002 Jul 25.
  145. Bamba, T., Fukusaki, E., Kajiyama, S., Ute, K., Kitayama, T., *Kobayashi, A., The occurrence of geometric polyprenol isomers in the rubber producing plant, Eucommia ulmoides Oliver. Lipids, 36, 727-732 (2001). doi: 10.1007/s11745-001-0778-5.
  146. Bamba, T., Fukusaki, E., Kajiyama, S., Ute, K., Kitayama, T., *Kobayashi, A., High-resolution analysis of polyprenols by supercritical fluid chromatography. J. Chromatogra. A, 911, 113-117 (2001). doi: 10.1016/S0021-9673(00)01250-4.

Proceeding

  1. *Bamba, T., Fukusaki, E., Minakuchi, H., Nakazawa, Y., Kobayashi, A., Separation of ployprenols using a monolithic silica column for high-performance liquid chromatography. International Symposium on Eucommia ulmoides, 1(1), 97-102 (2007).
  2. *Bamba, T., Fukusaki, E., Nakazawa, Y., Ute, K., Kitayama, T., Kobayashi, A., Analysis of ployprenols by supercritical fluid chromatography. International Symposium on Eucommia ulmoides, 1(1), 103-108 (2007).
  3. *Bamba, T., Fukusaki, E., Nakazawa, Y., Kobayashi, A., In situ localization of polyisoprene in Eucommia ulmoides. International Symposium on Eucommia ulmoides, 1(1), 109-111 (2007).
  4. Nakadozono, Y., Bamba, T., Chen, R., Namimatsu, S., Nakazawa, Y., *Gyokusen, K., Induction and analysis of polyisoprenoid in Eucommia ulmoides Oliver. International Symposium on Eucommia ulmoides, 1(1), 112-115 (2007).
  5. Li, X., Yue, J., Shi, Q., Bamba, T., Nakazawa, Y., Kobayashi, A., Fukusaki, E., *Su,Y., Ma, X., Trans-polyisoprene content and its molecular-weight distribution in various cultivars of Eucommia ulmoides. International Symposium on Eucommia ulmoides, 1(1), 91-93 (2007).
  6. Namimatsu, S., Bamba, T., Chen, R., Nakadozono, Y., Nakazawa, Y., *Gyokusen, K., Development of root culture system of Eucommia ulmoides Oliver for the evaluation of polyisoprene biosynthesis. International Symposium on Eucommia ulmoides, 1(1), 109-111 (2007).
  7. Ute, K., Yoshida, S., Kitayama, T., Bamba, T., Fukusaki, E., *Kobayashi, A., Minakuchi, H., Separation of oligomer homologs by supercritical fluid chromatography using monolithic silica column, Proceedings of Pacific Polymer Conference, Bangkok, Thailand (2003).
  8. Bamba, T., Fukusaki, E., Nakazawa, Y., *Kobayashi, A., In-situ localization of polyisoprene in a rubber-producing plant, Eucommia ulmoides Oliver. in E. A. Curry (editor), Proceedings of the plant growth regulation society of America, Vancouver, Canada (2003).

Review etc.

  1. Taguchi, K., Fukusaki, E., *Bamba, T., Supercritical fluid chromatography/mass spectrometry in metabolite analysis. Bioanalysis, 6(12), 1679-1689 (2014). doi: 10.4155/bio.14.120.
  2. Lee, J.W., Fukusaki, E., *Bamba, T., Application of supercritical fluid carbon dioxide to the extraction and analysis of lipids. Bioanalysis, 4(19), 2413-2422 (2012). doi: 10.4155/bio.12.198.
  3. *Bamba, T., Lee, J.W., Matsubara, A., Fukusaki, E., Metabolic profiling of hydrophobic compounds lipids by supercritical fluid chromatography/mass spectrometry. Chromatogra. A, 1250, 212-219 (2012). doi: 10.1016/j.chroma.2012.05.068. Epub 2012 May 28.
  4. Matsubara, A., Fukusaki, E., *Bamba, T., Metabolite analysis by supercritical fluid chromatography. Bioanalysis, 2(1), 27-34 (2010). doi: 10.4155/bio.09.160.
  5. *Bamba, T., Fukusaki E., Separation of hydrophobic metabolites using monolithic silica column in high-performance liquid chromatography and supercritical fluid chromatography. Sep. Sci., 32(15-16), 2699-2706 (2009). doi: 10.1002/jssc.200900124.
  6. *Bamba, T., Application of supercritical fluid chromatography to the analysis of hydrophobic metabolites. Sep. Sci., 31(8), 1274-1278 (2008). doi: 10.1002/jssc.200700499.
  7. Bamba, T., *Fukusaki, E., Technical problems and practical operations in plant metabolomics. Pest. Sci., 31(3), 300-304 (2006). doi: 10.1584/jpestics.31.300.

Book

  1. Yamada, T., Nagasawa, Y., Taguchi, K., Fukusaki, E.,  Bamba, T., Chapter 13 Polar Lipids Profiling by Supercritical Fluid Chromatography/Mass Spectrometry Method. In “Polar Lipids: Biology, Chemistry, and Technology”, AOCS Press, Urbana, IL, USA (2015). ISBN 978-1-630670-44-3.
  2. Tsugawa, H., Bamba, T., Chapter 6: Experimental Design. In ”Mass Spectrometry-Based Metabolomics: A Practical Guide”, CRC Press, Boca Raton, Florida, USA (2014).
  3. Matsuda, F., Putri, SP., Bamba,T., Chapter 2: Design of metabolomics experiment. In ”Mass Spectrometry-Based Metabolomics: A Practical Guide”, CRC Press, Boca Raton, Florida, USA (2014).
  4. Matsubara, A., Wada, Y., Fukusaki, E., Bamba, T., Metabolite profiling of carotenoids and their derivatives by supercritical fluid chromatography coupled with mass spectrometry. In “CHMICAL ENGINEERING SERIES Supercritical Fluid Separation Processes-Volume 1” (e-book), Science Network, Newfoundland, Canada, 1-23 (2014).
  5. Putri, SP., Bamba, T., Fukusaki, E. Application of metabolomics for discrimination and sensory predictive modeling of food products. In “Hot Topics in Metabolomics: Food and Nutrition” (e-book), Future Science, London, UK., 54-64 (2013). doi: 10.4155/ebo.13.503.
  6. Takeshi Bamba, Potential of supercritical fluid chromatography/mass spectrometry in metabolic profiling. 8th International Conference on Packed Column SFC, Basel, Switzerland, October 10th, 2014
  7. Takeshi Bamba, High-throughput simultaneous analysis of pesticides by supercritical fluid chromatography/mass spectrometry. 13th IUPAC International Congress of Pesticide Chemistry, San Francisco, CA, USA, August 11th, 2014
  8. Takeshi Bamba, Application of supercritical fluid chromatography/mass spectrometry to metabolic profiling, 4th International Conference and Exhibition on Analytical & Bioanalytical Techniques, Las Vegas, NV, USA, October 16th, 2013
  9. Takeshi Bamba, Development of metabolomics technology for lipid profiling using supercritical fluid chromatography/mass spectrometry. 2010 KSBB Fall Meeting &International Symposium, Inchon, Korea, October 8th